Equipment

Platform

 

No. of reads
(flow cell)

 

 

Output bases
(flow cell)

 

 

Run time

 

Read length

 

 

Cost per Run

 

 

Cost per MB

 

 

Errors

 

Illumina Hiseq 2500 Regular Mode

 

1.5 billion SE or PE   300 Gb   2/11 days 2x100bp   $12,674   $0.04   Substitution

Illumina Hiseq2500
Rapid Mode

 

300 million SE or PE   90 Gb   7/40 hr 2x150bp   $3,356   $0.04   Substitution

Life Tech Ion
Proton

 

60-80 million SE   ~10Gb   ~4 hours 100-200bp   $1,200   $0.15   Indels at homopolymers
 

Illumina's HiSeq 2500 Sequencer

Illumina-HiSeq-2500-Sequencer-160x118.jpg
PacBio RSII Platform  Integrative Genomics Core_PacBio
Fluidigm C1 Single-Cell Auto Prep System Integrative Genomics Core_FludigmC1

Illumina's cBot

Life Technologies' Ion ProtonTM Sequencer

Life-Tech-Ion-Proton-Seq-160x127.jpg

Life Technologies' Ion One Touch2

Life-Tech-Ion-One-Touch2-160x127.jpg

Life Technologies' 3730 DNA Analyzer

Life-Tech-3730-dna-analyzer-160x145.jpg

Affymetrix GeneChip System

Affymetrix-GeneChip-System.160x74.gif

Illumina's Hiscan System

Illumina-Hiscan-system-160x183.jpg

Agilent Microarray System

Integrative Genomics Core_Agilent Microarray System

Agilent Bioanlyzer

Integrative Genomics Core_Agilent Bioanlyzer

Qubit Flurometer

Integrative Genomics Core_Qubit Flurometer

Nanodrop

Integrative Genomics Core_Nanodrop